Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs58656226 chr16:89745091 T/G 1.65E-5 487 31.07 28.8 22.52 KM Plot
PRAD rs58671384 chr17:62976596 A/G 8.78E-9 490 30.8 31.33 19.63 KM Plot
PRAD rs58716039 chr8:146210644 AT/A 9.01E-5 488 29.17 35.67 31.45 KM Plot
PRAD rs58779891 chr22:46626268 C/CA 2.95E-8 483 31.27 26.13 17.53 KM Plot
PRAD rs58818518 chr20:6083253 G/T 8.09E-7 489 31 28.87 31.77 KM Plot
PRAD rs58840451 chr5:138004941 G/A 9.3E-6 484 30.8 31.28 25.5 KM Plot
PRAD rs58861077 chr8:54185833 A/T 2.75E-6 492 31.27 27.77 49.93 KM Plot
PRAD rs58946921 chr1:167506299 G/C 0.000159 482 30.93 31.25 15.77 KM Plot
PRAD rs58947238 chr8:54186643 G/T 2.7E-6 493 31.27 27.77 49.93 KM Plot
PRAD rs58948879 chr9:72846286 T/A 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs58976318 chr9:72846418 T/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs5898130 chr9:72870616 CA/C 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs59045651 chr2:42150962 T/C 1.47E-8 493 29.52 35.85 20.53 KM Plot
PRAD rs59125977 chr17:79644042 A/G 9.43E-5 489 29.13 32.7 25.17 KM Plot
PRAD rs59138653 chr1:93749663 GA/G 0.000175 489 31.28 27.13 28.77 KM Plot